Data governance challenges in Healthcare: A complete guide

Did you know that AI-assisted mammography screening has been shown to increase breast cancer detection rates by 17.6%? This breakthrough is only possible if the underlying data is clean and reliable.
AI is already reshaping healthcare workflows, from diagnostics and predictive analytics to operational efficiency. However, its success depends on the integrity of the data it processes. Without structured governance, fragmented or incomplete data can lead to misdiagnoses, compliance risks, and unreliable AI models.
Mark Your Calendar – On April 9, 2025, Secoda is hosting the Data Leaders Forum, an online event for leaders and innovators in data governance. The second panel, "Balancing data, privacy, and AI in healthcare," will bring together industry experts to explore how structured data management strengthens compliance and powers AI-driven innovations in healthcare.
Healthcare data often exists in silos, spread across electronic health records (EHRs), billing systems, and patient management tools. Without standardized definitions, discrepancies arise, leading to inefficiencies and compliance risks.
Same metric, three different definitions of "Number of Patients Treated in a Day":
When metrics are misaligned, AI-driven analytics don’t fix the problem—they make it worse. For healthcare data leaders, addressing foundational governance issues is crucial to ensuring AI enhances rather than disrupts decision-making.
When healthcare organizations deploy AI without addressing governance fundamentals, several risks emerge:
Strong data governance ensures AI models are trained on clean, reliable data—preventing misleading predictions. In healthcare, accuracy is only part of the equation. Organizations must also comply with strict regulations like HIPAA, where governance gaps can lead to significant fines and data breaches.
For global healthcare organizations, the compliance landscape is even more complex. The EU’s General Data Protection Regulation (GDPR) imposes stricter requirements around consent and data protection. In 2023, a multinational healthcare technology provider was fined €1.2 million after failing to safeguard cross-border data transfers.
With these challenges addressed, healthcare organizations are unlocking AI's potential to transform patient care.
Healthcare organizations are increasingly using AI to improve outcomes across key areas:
Diagnostic assistance
Predictive analytics
Operational efficiency
However, these AI applications are only as effective as the data they rely on. For healthcare data leaders, robust governance isn’t optional—it’s the foundation for delivering safe, effective AI that improves patient outcomes.
Modern governance tools help healthcare organizations maintain regulatory compliance, detect data quality in real time, and standardize critical metrics to prevent inconsistencies across teams.
Key benefits of healthcare-focused governance tools:
Effective governance isn’t just about regulatory checklists—it’s key to building patient trust, delivering high-quality care, and ensuring AI systems produce accurate, actionable insights. As patients grow more aware of how their data is used, organizations that prioritize security and transparency are quickly becoming providers of choice.
Successfully implementing data governance in healthcare requires more than just commitment—it demands specific technical capabilities that address the unique challenges of medical data. Healthcare organizations should prioritize these essential components:
Organizations that invest in these capabilities create a foundation for both regulatory compliance and AI innovation, positioning themselves to leverage emerging technologies while maintaining data integrity.
The link between governance, compliance, and AI effectiveness becomes clear when examining real-world case studies:
HIPAA extends beyond cybersecurity; strong governance policies are key to protecting patient data and ensuring compliance.
In 2020, Lifespan Health System paid $1.04 million after an unencrypted laptop containing PHI of 20,431 patients was stolen. The investigation revealed governance failures:
This case illustrates how robust data governance helps organizations meet HIPAA requirements while building a secure and scalable AI foundation.
Fullscript, a healthcare platform serving 90,000+ practitioners, faced governance challenges in managing healthcare data across 20,000+ products and 300+ brands. By implementing structured governance, they achieved:
Using governance tools like Secoda, Fullscript standardized metrics, ensured compliance, and scaled operations effectively—demonstrating how proper governance enables innovation.
The Data Leaders Forum event is specifically designed for healthcare data professionals, compliance officers, and AI strategy teams who face the dual challenge of regulatory compliance and innovation. Attendees will learn:
As we've seen throughout this guide, health data represents perhaps the most valuable strategic asset in modern healthcare. Organizations that implement robust governance frameworks not only ensure regulatory compliance but also uphold the ethical standards that patients increasingly expect. The future of healthcare belongs to organizations that recognize data's strategic value and govern it with both compliance and ethics at the forefront.
Struggling with data fragmentation, reporting inconsistencies, or balancing HIPAA compliance with AI? You're not alone.
Join us at the Data Leaders Forum to learn how leading healthcare organizations are tackling these challenges head-on.
In our latest webinar, experts discuss how governance frameworks can fuel AI innovation, manage unstructured data, and drive business value. As AI adoption accelerates, data governance is transforming from a compliance necessity to a strategic enabler - get the recap of the full discussion now.